Heatmaps are generated using the unique breakpoints found across all samples, and their values correspond to their relative read counts or copy number as determined by their dissimilarity structure for each respective dendrogram.
Heatmap of copy number values across all segment breakpoints (using Euclidian distance metric)
Heatmap of copy number values across all segment breakpoints (using correlation)
Heatmap of normalized read counts across segment breakpoints (using Euclidian distance metric)
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Analysis Parameters
Genome: hg19 Binning: variable bins of 500kb size (bowtie/101bp reads) Segmentation: using normalized read counts Clustering: ward linkage, euclidean distance
Statistics: Bin count statistics for each cell (2 KB).
Breakpoints: Matrix that encodes whether a cell has a breakpoint at a bin position; 1 = breakpoint present, 0 = no breakpoint at that position; rows = bins, columns = cells (434 KB).
Copy Number: Integer coopy-number state for each cell at every bin position; rows = bins, columns = cells (436 KB).
Normalized Counts: Normalized bin counts for each cell at every bin position; rows = bins, columns = cells (2.71 MB).
Normalized and Segmented Counts: Normalized and segmented bin counts for each cell at every bin position; rows = bins, columns = cells (2.72 MB).