Ginkgo

Your files are uploaded. Now let's do some analysis:

STEP 1 Choose cells for analysis




STEP 2 Set analysis options

Job name:
Genome:


STEP 3 E-mail notification

If you want to be notified once the analysis is done, enter your e-mail here:



OPTIONAL Advanced parameters

Sample Parameters
CNV Profile Color Scheme Use color scheme.
General Binning Options Use a bin size of size.
Binning Simulation Options Bins based on simulations of bp reads, mapped with .
Segmentation Use method to segment.
Mask bad bins (experimental)
Removes bins with consistent read pileups from the analysis (e.g. at chromosome boundaries)
Mask Y-chr pseudoautosomal regions (experimental)
Description
Clustering Parameters
Clustering Use .
Distance metric Use distance.
Include sex chromosomes?
Uncheck this box for mixed-gender samples
FACS File
FACS file:
Upload a file with 2 columns: first column is cell name, second column is estimated ploidy by FACS (by DAPI stain)
Select .txt file Change Remove


Manage Files
Start Analysis



View analysis later

Access your results later at the following address: