Ginkgo

Your files are uploaded. Now let's do some analysis:

STEP 1 Choose cells for analysis




STEP 2 Set analysis options

Job name:
Genome:


STEP 3 E-mail notification

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OPTIONAL Advanced parameters

Sample Parameters
CNV Profile Color Scheme Use color scheme.
General Binning Options Use a bin size of size.
Binning Simulation Options Bins based on simulations of bp reads, mapped with .
Segmentation Use method to segment.
Mask bad bins (experimental)
Removes bins with consistent read pileups from the analysis (e.g. at chromosome boundaries)
Mask Y-chr pseudoautosomal regions (experimental)
Description
Clustering Parameters
Clustering Use .
Distance metric Use distance.
Include sex chromosomes?
Uncheck this box for mixed-gender samples
FACS File
FACS file:
Upload a file with 2 columns: first column is cell name, second column is estimated ploidy by FACS (by DAPI stain)
Select .txt file Change Remove



Manage Files
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Access your results later at the following address: