Genome Assembly Performance Prediction


This is the Genome Assembly Performance Prediction Service. If you have any queries please email Hayan Lee (hlee@cshl.edu).

Although assembly performance is a function of genome size, read length, coverage and repeats, in this prediction model, we only used 3 features; genome size, read length and coverage for the simplicity.

Given genome size, we internally set read lengths and coverages for you. With 3 features, our model predicts the expected performance of assembly. Performance is defined as follows:

Performance(%) = N50 of assembly / N50 of chromosome segments

Genome size :







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